Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015366
Fusion event
HBV-EVPLL integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
Start
End
18287138/18383824 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1253/Upstream/42938; hsa-mir-10226/Downstream/960682;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/341, chr17-CpG: 35/Downstream/27881
Upstream sequence
TGCAGGCCAACCCCTTTCCTGTACATATTCAGCCTCTCCAGTAAATTATATTTGTTACACGAATTTCCATTACATTAGTCTCTACTCACCTTTTTTCAGG
Downstream sequence
tagctagaggtggtggcacgcgcctgtaatcccagctactcaggaggctgaggcaggagaatcgcttgaacccaggaggcggaggttgcagtgggccgag
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.