EVPL _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015368
Fusion event
HBV-EVPL integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
74017380/76021299 (Hg38)
End
74017380/76021299 (Hg38)
Location type
Intronic
Target gene
EVPL
Nearest miRNA
hsa-mir-10226/Upstream/236692; hsa-mir-1250/Downstream/76720;
Nearest TSS
ENST00000595228/Upstream/9008; ENST00000329003/Downstream/5932;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/6125, chr17-CpG: 78/Downstream/271
Upstream sequence
CTCTGCATGAgtgtgtgtgtgtgtgtgtgtgtatgtgtttgtAGGAGATGGGGAGAAGAGAGAGACAGAGTGCACAAGACCTAGCAAATAGGAAGAGAGG
Downstream sequence
ccagcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgccctgccAGCTCTGTCTAGTTGGGAGGTGCAGTGCCTCTCCTGTGGGCAGG
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate