CREB3L3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015369
Fusion event
HBV-CREB3L3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
4165626/4165629 (Hg38)
End
4165626/4165629 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
CREB3L3
Nearest miRNA
hsa-mir-1227/Upstream/204117; hsa-let-7e/Downstream/280349;
Nearest TSS
ENST00000633603/Upstream/1186; ENST00000595928/Downstream/13874;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/41280, chr19-CpG: 29/Downstream/7527
Upstream sequence
TTCAACTCCGACTCTTCCATGAAGCCCTCGAGGCTCACTCCAGGCCCCCCAACCTCACCCCACTGCCCAGCTCTAAGCAGGAGCTCGGGAGGATGACTCA
Downstream sequence
ggcagaggatcacttgaggtcaggagttcgagactagcctggccaacatggtgaaaccccgtctctactaaaattacaaaaattagctgtgcctggtggt
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate