Basic Information
VIS ID
TVIS10015370
Fusion event
HBV-chr2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
234132145/233223499 (Hg38)
End
234132145/233223499 (Hg38)
Nearest miRNA
hsa-mir-10b/Upstream/672926; hsa-mir-149/Downstream/4287432;
Nearest TSS
ENST00000437798/Upstream/13448; ENST00000485623/Downstream/28072;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/18723, chr2-CpG: 72/Downstream/27955
Upstream sequence
ctgggaacctcacccccatcctccacagcagctgcagctgcagcaagacctgcccaaaaagagtctgagctcagacatgcctagctctgcccccacccac
Downstream sequence
cgcctcagcctcccaaaatgctaggattataagtgtgagccaccgtgcccagccaagatttatacattttacataaaatggtacaatattaactctaaat
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate