VIPR1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015371
Fusion event
HBV-VIPR1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr3
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
42560005/42518513 (Hg38)
End
42560005/42518513 (Hg38)
Location type
Intronic
Target gene
VIPR1
miRNAs that regulate target gene
hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-500a-3p ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-532-3p ; hsa-mir-1224-3p ; hsa-mir-4494 ; hsa-mir-4499
Nearest miRNA
hsa-mir-12127/Upstream/3380247; hsa-let-7g/Downstream/1595699;
Nearest TSS
ENST00000440867/Upstream/1695; ENST00000495189/Downstream/9140;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/15481, chr3-CpG: 22/Downstream/17583
Upstream sequence
tacattaaaccaaaatagggcaactatgtgctgtaacaaaagatttaagtagtctaagaatcccctaacataagtaaccaaatctcaggaatacaatcaa
Downstream sequence
ggatcacttgaggtcaggagttcgagatcagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcgtggcggcatgggc
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate