Basic Information
VIS ID
TVIS10015372
Fusion event
HBV-chr6 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
93683084/92973366 (Hg38)
End
93683084/92973366 (Hg38)
Fragile sites / regions
FRA6G
Nearest miRNA
hsa-mir-10398/Upstream/1451629; hsa-mir-1202/Downstream/5051165;
Nearest TSS
ENST00000381078/Upstream/249537; ENST00000452624/Downstream/97021;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2361866, chr6-CpG: 92/Downstream/443188
Nearby gene
LOC105377897(+6233) ;
Upstream sequence
tcccaaagttctgggattacaggtgtgagccaccgctcccggccTGCATTAACTTTTAGAAATAAAAGCTTAAAATCGATAGCTATCTGTGACTTACGCA
Downstream sequence
GAggatcacttgaggtcaggagttcgagatcagcctgaccaacatggtgaaaccctatctctactaaaaatgcaaaaattagcggggcatgatggcgggt
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate