Basic Information
VIS ID
TVIS10015373
Fusion event
HBV-chr12 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr12
Cytoband
q12
Reference genome
GRCh37/hg19
Start
38383335/37989533 (Hg38)
End
38383335/37989533 (Hg38)
Nearest miRNA
hsa-mir-1244-3/Upstream/12115454; hsa-let-7i/Downstream/4334167;
Nearest TSS
ENST00000382841/Upstream/3770680; ENST00000553138/Downstream/327045;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/3638854, chr12-CpG: 44/Downstream/148693
Upstream sequence
TCTGAAGTCTTCTGTACCTCCAAGAGTCTATCCACGTATTTATGCTGGAAAGCACAGAAGTAATTAAGTCTAACTGTGCAACTGTGGGGGGAACCATTTA
Downstream sequence
AAAATAAGTACTTACTAAAGTATTCATTTTTTGCCACAACATGTGGCAATCGAACAGGTCTGACAAAAGCAAACATTAAAAAAACATGTATGGATTGCTT
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate