Basic Information
VIS ID
TVIS10015386
Fusion event
HBV-chr12 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
95693/10045 (Hg38)
End
95693/10045 (Hg38)
Nearest miRNA
hsa-let-7i/Downstream/1650270;
Nearest TSS
ENST00000382841/Downstream/28057;
Nearest CpG islands
None/Target, None/Upstream, chr12-CpG: 104/Downstream/20744
Nearby gene
WASH8P(+2265) ;
Upstream sequence
ggggtagaaggtgggaggctggggtagaaggtgggaggcactggggtagaaggtgggaggctggggtagaaggtgggaggcactggggtagaaggtggga
Downstream sequence
ggctggggtagaaggtgggaggctggggtagaaggtgggaggctggggtagaaggtgggaggcactggggtagaaggtgggaggctggggtagaaggtgg
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
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