Basic Information
VIS ID
TVIS10015387
Fusion event
HBV-chr15 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
102521368/101981165 (Hg38)
End
102521368/101981165 (Hg38)
Nearest miRNA
hsa-mir-10393/Upstream/7574;
Nearest TSS
ENST00000557528/Upstream/19757;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/18939, None/Downstream
Nearby gene
DDX11L9(-2072) ;
Upstream sequence
TCACCCCTACCTCCCTTGCAGCCAATAATTTATTACTTACCGAGTTCATCCTTTAGGAAAATATAGTGTTCATTCGTGGAGTTATTCATGTGTCAGCTTT
Downstream sequence
gggttagggttagggttagggttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
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