Basic Information
VIS ID
TVIS10015390
Fusion event
HBV-chr8 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr8
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
43323328/43468185 (Hg38)
End
43323328/43468185 (Hg38)
Nearest miRNA
hsa-mir-124-1/Upstream/571910; hsa-mir-10400/Downstream/18246603;
Nearest TSS
ENST00000518652/Upstream/272017; ENST00000518278/Downstream/3354052;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/190850, chr8-CpG: 41/Downstream/3149182
Upstream sequence
GATAAGTGGATATTTTTGGTCTTGCATTGGGGCACAATAACAGGCTGACATAAGCAATTCCTGACTATAATCTTTTGTTGAGTAATCTGAAAGTAAATAA
Downstream sequence
tgtcatcattatttcaaattttttttctgcttttttttctctcatctctgtctggaattcccattatgcatatttacactttctgtagttgtcccactga
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate