Basic Information
VIS ID
TVIS10015392
Fusion event
HBV-chr17 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
51090043/53012683 (Hg38)
End
51090043/53012683 (Hg38)
Nearest miRNA
hsa-mir-10226/Upstream/2243953; hsa-mir-1250/Downstream/3878587;
Nearest TSS
ENST00000595228/Upstream/27163; ENST00000268919/Downstream/810218;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/853809, chr17-CpG: 17/Downstream/744606
Upstream sequence
TGTTCCAAGTGGTGCCAGCTAAGCATCCTGCTCCTCCAGTATAAAAGCCAAGTACAGTCTTTTATGGGTTGCACTTCACTAAATTCAAAAAGACTGTCTAAATCATGCTTTTATAGTTAAAAATAACAGAGTACAACCCCCTTTTAAACCACACTTAAGCAAAGGGAGAATTGGATTATTTGTTATAAAAAGACCATTTGGGTATGGAAAATAT
Junction sequence
TGTTCCAAGTGGTGCCAGCTAAGCATCCTGCTCCTCCAGTATAAAAGCCAAGTACAGTCTTTTATGGGTTGCACTTCACTAAATTCAAAAAGACTGTCTAAATCATGCTTTTATAGTTAAAAATAACAGAGTACAACCCCCTTTTAAACCACACTTAAGCAAAGGGAGAATTGGATTATTTGTTATAAAAAGACCATTTGGGTATGGAAAATATCTTGTTCCCAAGAATATGGTGACCCGCAAAATGAGGCGCTACGTGTGGACTCTCT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate