Basic Information
VIS ID
TVIS10015393
Fusion event
HBV-chrX integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chrX
Cytoband
q23
Reference genome
GRCh37/hg19
Start
115667429/116536248 (Hg38)
End
115667429/116536248 (Hg38)
Nearest miRNA
hsa-let-7f-2/Upstream/1712684; hsa-mir-105-1/Downstream/1850146;
Nearest TSS
ENST00000429181/Upstream/73245; ENST00000493448/Downstream/157940;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/567184, chrX-CpG: 74/Downstream/1580022
Upstream sequence
TCAGTTATATGGATGATGTGGTTTTGGGGGCCAAGTCTGTACAACATCTTGAGTCCCTTTATGCCGCTGTTACCAATT
Junction sequence
TCAGTTATATGGATGATGTGGTTTTGGGGGCCAAGTCTGTACAACATCTTGAGTCCCTTTATGCCGCTGTTACCAATTTTCTATCAAAGGATATTTGTTTTTTTCCAATATTTTGCCATTATAAATTATTTCACTTTGAGGGTTCTTGTGAATAAGTGATTGTGAATATTTGTCAGTGTATCTTTGG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate