ZNF33B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015399
Fusion event
HBV-ZNF33B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
42596862/42596862 (Hg38)
End
42596862/42596862 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA10G
Target gene
ZNF33B
Nearest miRNA
hsa-mir-1265/Upstream/6955610; hsa-mir-107/Downstream/400701;
Nearest TSS
ENST00000439456/Upstream/2195; ENST00000439913/Downstream/35505;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/43838, chr10-CpG: 56/Downstream/41213
Upstream sequence
cagcttgaattctcctcagaaaatgggattttcttttctattgtattgtcaggctgcaaattttccaaacttttatgctctgcttccgttataaaactga
Downstream sequence
atgcctttaacagcacccaagtcacctcttcaatgcttggatgcttagaaatttcttctgccagataccctaaatcacctctctcaagttcaaagttcca
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate