Basic Information
VIS ID
TVIS10015400
Fusion event
HBV-chr10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
42599291/42103843 (Hg38)
End
42599291/42103843 (Hg38)
Nearest miRNA
hsa-mir-1265/Upstream/6462591; hsa-mir-107/Downstream/893720;
Nearest TSS
ENST00000439456/Upstream/3650662; ENST00000442306/Downstream/81496;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/3160737, chr10-CpG: 184/Downstream/7190
Upstream sequence
TGTTGTGGTTACAGTTTCATTGTCATATAGATCTTTTGGTTGTGTGTTTTCTACTGGTATTTTTTATTTTTCCCCTCTACTTGAGTCTTTTTTGCTTTGT
Downstream sequence
TTTGGGTGtttttggtttttttttttagatgcagtctcgctcttgtcacccaggccgaaatgcgatggtgtgatcttggcactgcaacttctgcctcctg
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate