Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015401
Fusion event
HBV-GLT1D1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
End
129385352/128900807 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7i/Upstream/606629; hsa-mir-6763/Downstream/3681190;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/46481, chr12-CpG: 25/Downstream/44251
Upstream sequence
tgtgtctgtgtgtatctgtgtgtctgtggtttgggggtgtgtgggggggtctgtgtgtgtatctgtgtgtatgtggtttggggtgtgtgtgtatgtggtg
Downstream sequence
tgaggtgtatgtgtgtgtgtgtggtgtgggggtttgtgtgtgcctatgtgtgtgtagctgtgtatatgtggtttggagtgtgtgtgtgtggtgtgaggtg
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.