Basic Information
VIS ID
TVIS10015406
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr5
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
103604810/104269109 (Hg38)
End
103604810/104269109 (Hg38)
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/3452544; hsa-mir-103a-1/Downstream/6244720;
Nearest TSS
ENST00000502646/Upstream/189198; ENST00000523745/Downstream/470432;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1009260, chr5-CpG: 253/Downstream/3400320
Nearby gene
RN7SL255P(-8283) ;
Upstream sequence
atattaactctaactagctttgcagacataaagtattaCAAGACAAGGGTAATTTACGTGTTATTTTGTTCTGCCGTGTCTCTCTGACTCACTCTTTAAT
Downstream sequence
tatttttagtagagacagcatttcgccatgttggccagtctggtctcaaacttctggcctcaagtgatcctcccaccttgacctctcaaagtgctaggat
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate