VISDB Viral Integration Site DataBase

VIS ID

TVIS10015408

Fusion event

HBV-EIF1AX integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chrX

Cytoband

p22.12

Reference genome

Start

End

20156099/20137981 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-18a-3p ; hsa-mir-345-5p ; hsa-mir-497-3p ; hsa-mir-4666a-5p ; hsa-mir-7849-3p ; hsa-mir-7850-5p ; hsa-mir-21-5p ; hsa-mir-590-5p ; hsa-mir-4495 ; hsa-mir-129-5p ; hsa-mir-1250-3p ; hsa-mir-6885-3p ; hsa-mir-382-5p ; hsa-mir-5579-3p ; hsa-mir-3158-5p ; hsa-mir-5007-3p ; hsa-mir-3065-5p ; hsa-mir-7159-5p ; hsa-mir-6875-3p ; hsa-mir-4699-5p ; hsa-mir-505-3p ; hsa-mir-4659a-3p ; hsa-mir-4659b-3p ; hsa-mir-3978 ; hsa-mir-152-5p ; hsa-mir-5093 ; hsa-mir-570-3p ; hsa-mir-4766-5p ; hsa-mir-4726-3p ; hsa-mir-548as-3p ; hsa-mir-5011-3p ; hsa-mir-4536-5p ; hsa-mir-8065 ; hsa-mir-6124 ; hsa-mir-4795-5p ; hsa-mir-550b-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-3908 ; hsa-mir-5700 ; hsa-mir-548e-5p ; hsa-mir-4662b ; hsa-mir-4426 ; hsa-mir-4647 ; hsa-mir-613 ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-653-5p ; hsa-mir-568 ; hsa-mir-6853-3p ; hsa-mir-1206 ; hsa-mir-1279 ; hsa-mir-617 ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-8063 ; hsa-mir-4698 ; hsa-mir-888-5p ; hsa-mir-6866-5p ; hsa-mir-3152-3p ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-562 ; hsa-mir-5583-5p ; hsa-mir-3129-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-877-5p ; hsa-mir-4496 ; hsa-mir-1243 ; hsa-mir-3654 ; hsa-mir-2054 ; hsa-mir-488-3p ; hsa-mir-1303 ; hsa-mir-1273e ; hsa-mir-376a-2-5p ; hsa-mir-1253 ; hsa-mir-3123 ; hsa-mir-3925-5p ; hsa-mir-544a ; hsa-mir-6797-3p ; hsa-mir-6076 ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-6787-3p ; hsa-mir-4778-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-1224-5p ; hsa-mir-4751 ; hsa-mir-5004-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-580-5p ; hsa-mir-6505-3p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-411-5p

Nearest miRNA

hsa-mir-23c/Upstream/120794; hsa-let-7f-2/Downstream/8357574;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/20749, chrX-CpG: 82/Downstream/3322

Upstream sequence

acctcagaggcggaggtttcagtgagccgagacggtgcactgcactccagcctgggcaacagagaaagactctgtctcaaaaTAATAACaataattaaat

Downstream sequence

catctctatacagttttttttttttttttttttttttttttgagacagagtctccctctgtcacccaggctggagtgcagtggtgtgatctcggctcact