Basic Information
VIS ID
TVIS10015414
Fusion event
HBV-chr10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
End
42598338/42102890 (Hg38)
Nearest miRNA
hsa-mir-1265/Upstream/6461638; hsa-mir-107/Downstream/894673;
Upstream sequence
acaaacagaatcacaacactctttacttcctcctcctctactcacttctggttcatgtcaccttcatccctctctcacatggattattgtaacaacctct
Downstream sequence
tcctccctaatccacataccatctactctccataaagcagccagactgatccactaaaatataagtggtattatgtcatccttgcccaaaaatctccagt
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate