Basic Information
VIS ID
TVIS10015420
Fusion event
HBV-chr8 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr8
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
43096000/43240857 (Hg38)
End
43096000/43240857 (Hg38)
Nearest miRNA
hsa-mir-124-1/Upstream/344582; hsa-mir-10400/Downstream/18473931;
Nearest TSS
ENST00000518652/Upstream/44689; ENST00000518278/Downstream/3581380;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/99409, chr8-CpG: 95/Downstream/5489
Nearby gene
LOC101059977(+5400) ;
Upstream sequence
GGCTGACATAAGCAATTCCTGACTATAATCTTTTGTTGAGTAATCTGAAAGTAAATAAAAAACTGTTTAAAATAGCATTTATCATTTCTCCTACCACTGA
Downstream sequence
taccaaatacatactatatactataactaaaatatcaaagtacaccaaatacataatatatactgtacataaaatacctaagtacaccaaatacatatta
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate