Basic Information
VIS ID
TVIS10015421
Fusion event
HBV-chr8 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr8
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
43821906/43966763 (Hg38)
End
43821906/43966763 (Hg38)
Nearest miRNA
hsa-mir-124-1/Upstream/1070488; hsa-mir-10400/Downstream/17748025;
Nearest TSS
ENST00000518652/Upstream/770595; ENST00000518278/Downstream/2855474;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/689428, chr8-CpG: 41/Downstream/2650604
Upstream sequence
TGAAAGTAAATAAAAAACTGTTTAAAATAGCATTTATCATTTCTCCTACCACTGATTAAACAGGGTTCTGGTAGAATAAAAGTTTGATATCAAAAATGAA
Downstream sequence
gtggacatttggagcgctttctgaactatggtgaaaaaggaaatatcttccaatgaaaacaagacagaagcattctgagaaacttatttgcgatatgtgt
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate