Basic Information
VIS ID
TVIS10015424
Fusion event
HBV-chr1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr1
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
121485094/121743296 (Hg38)
End
121485094/121743296 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/4648568; hsa-mir-1182/Downstream/24107291;
Nearest TSS
ENST00000473358/Upstream/162772; ENST00000443018/Downstream/21757216;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/223569, chr1-CpG: 312/Downstream/3342213
Upstream sequence
aagttagtggtagagttagggcttgtacccagtttcctgagtgccagtcaaaaccctcccattctgctaTATCTTTTTTTCTTGGTGTTTTTAAAGATTC
Downstream sequence
CATCTAGTTCCAAAAGTATAAAATTCTAAGTAGGGGTATAGAAATTAATCCTCGTGTACTCTGAGATGTCCTCTCTTCTTCACTTACCCCTTCTTACCCT
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate