Basic Information
VIS ID
TVIS10015425
Fusion event
HBV-chr19 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr19
Cytoband
q11
Reference genome
GRCh37/hg19
Start
27740218/27249310 (Hg38)
End
27740218/27249310 (Hg38)
Nearest miRNA
hsa-mir-10395/Upstream/6849956; hsa-let-7e/Downstream/7873390;
Nearest TSS
ENST00000633603/Upstream/3102609; ENST00000588318/Downstream/391328;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/3277353, chr19-CpG: 42/Downstream/544310
Upstream sequence
GACTTCCTCCAAAGTCCCATTCCATTGCCCAGGCAGCTTCTTGACTCAGGCAAGTTCCTTCAACCTAGAATAGAGCCCACCTTCCCACTCATGCACCCTC
Downstream sequence
tcagtaacttccttgtgttgtgtgtattcaactcacagagttgaaccctcctttagacagagcagatttgatacactctttttgtggaatttggaagtgg
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate