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VISDB
Viral Integration Site DataBase
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TVIS10015426
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015426
Fusion event
HBV-TERT integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1295295/1295180 (Hg38)
End
1295295/1295180 (Hg38)
Location type
Promoter
Target gene
TERT
miRNAs that regulate target gene
hsa-mir-138-5p
;
hsa-mir-498
;
hsa-mir-193b-3p
;
hsa-mir-335-5p
;
hsa-mir-512-5p
;
hsa-mir-1207-5p
;
hsa-mir-1266-5p
;
hsa-mir-1182
;
hsa-mir-181a-5p
;
hsa-mir-6776-3p
;
hsa-mir-197-3p
;
hsa-mir-6740-3p
;
hsa-mir-6760-3p
;
hsa-mir-532-5p
;
hsa-mir-3064-5p
;
hsa-mir-422a
;
hsa-mir-346
;
hsa-mir-1226-3p
;
hsa-mir-1255a
;
hsa-mir-1255b-5p
;
hsa-mir-143-3p
;
hsa-mir-3161
;
hsa-mir-3605-5p
;
hsa-mir-3620-3p
;
hsa-mir-3682-3p
;
hsa-mir-4323
;
hsa-mir-4712-3p
;
hsa-mir-4733-3p
;
hsa-mir-4758-3p
;
hsa-mir-4770
;
hsa-mir-6088
;
hsa-mir-7112-3p
Nearest miRNA
hsa-mir-4635/Upstream/232206; hsa-mir-10397/Downstream/14130;
Nearest TSS
ENST00000502646/Upstream/111;
ENST00000605200/Downstream/26649;
Nearest CpG islands
chr5-CpG: 485/Target
, None/Upstream, None/Downstream
Nearest cancer related gene
TERT
(OG, No orient, 0)
Upstream sequence
gtactatgatgcctccagctttgctcttttcattcagggttgctttggctagtcagagtcttttgtggttctgtatgtagtgaattttaagattgtcttt
Downstream sequence
aaggtgaaggggcaggacgggTGCCCGGGTCCCCAGTCCCTCCGCCACGTGGGAAGCGCGGTCCTGGGCGTCTGTGCCCGCGAATCCACTGGGAGCCCGG
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Sample Information
×
Sample name
64T
Sample type
Tumor
Gender
Female
CpG Island Information
×
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