Basic Information
VIS ID
TVIS10015432
Fusion event
HBV-chr2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
113202130/112444553 (Hg38)
End
113202130/112444553 (Hg38)
Fragile sites / regions
FRA2S ; FRA2B
Nearest miRNA
hsa-mir-1285-2/Upstream/673419; hsa-mir-10b/Downstream/1138406;
Nearest TSS
ENST00000437798/Upstream/10065; ENST00000485537/Downstream/37601;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/10856, chr2-CpG: 167/Downstream/37119
Upstream sequence
ATTTGGTCAAGTTACAAACCCAAAATCAGAGTCAGCTCTGAACTCCTGATTAAAGCATCATATGGAGGTGACTATGTAAATGGTAACGTGCAAGGACAAA
Downstream sequence
aggaaaagaaatcattatatcaaaaagataactgcactcatatgtttatcacagcattattcacaatagcaaagatatggaatcagccaggtgctgtggc
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
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