Basic Information
VIS ID
TVIS10015433
Fusion event
HBV-DDX11L1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
End
10115/10115 (Hg38)
Location type
Promoter
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-101-1/Downstream/7254;
Nearest CpG islands
None/Target, None/Upstream, chr1-CpG: 111/Downstream/18620
Upstream sequence
TGATCCCAAACAGTGGGGAATCCGAAAGTCAATTATATCTGGATTTGAAGGAATTACATGATTATATTTGCTGCAGGTCGGCCTTCCTAATTATGATTAA
Downstream sequence
TTAAGCTAATGCTGGGCTCAGTTTGCCCTCCGAGGGCTACCAGGTGACGCCAGATGTGGGAATCGCTCCCCAGCTGACAGAGCCCAGTTGTGGTGGGTTT
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate