IGSF21 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015434
Fusion event
HBV-IGSF21 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
GRCh37/hg19
Start
18580849/18254355 (Hg38)
End
18580849/18254355 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
IGSF21
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-12136/Upstream/976380; hsa-mir-101-1/Downstream/628847;
Nearest TSS
ENST00000473358/Upstream/75009; ENST00000412684/Downstream/24490;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/143176, chr1-CpG: 18/Downstream/111025
Upstream sequence
aaccccatctctactaaaaatacaaaaattagctgggtatagtaattccagctacttgggaggctgaggcaggagaatcgcttttgaagccaggaggcgg
Downstream sequence
agtttgtggtgagctgagatcgcaccattgtactccagcctgggcaacaagagcaaaactctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaagaGAGA
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate