Basic Information
VIS ID
TVIS10015441
Fusion event
HBV-LOC440040 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr11
Cytoband
p11.12
Reference genome
GRCh37/hg19
Start
49749977/49728425 (Hg38)
End
49749977/49728425 (Hg38)
Location type
ncRNA_intronic
Target gene
LOC440040
Nearest miRNA
hsa-mir-129-2/Upstream/1631567; hsa-let-7a-2/Downstream/7015448;
Nearest TSS
ENST00000527297/Upstream/519755; ENST00000555099/Downstream/223966;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/169698, chr11-CpG: 25/Downstream/89303
Upstream sequence
ATCCCTTTAGTAGAGCTTGCCCCTTCACAGCTACAACAATATGCTTGTAAATTCACTTTTGCATTGCTGGAAAAAATACACTTGCTAAGAGTCCTTTTCT
Downstream sequence
TATGTGTGGTTTCCCATCCAATTATTCAATGCATTTTGGTTTTTATAACTCCAGGCTACTGACACCTGTCTCTTGGTCCCACCCACAAGTGCAAGCACAC
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
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