Basic Information
VIS ID
TVIS10015442
Fusion event
HBV-chr16 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
33896652/34094185 (Hg38)
End
33896652/34094185 (Hg38)
Nearest miRNA
hsa-mir-1225/Upstream/3200200; hsa-mir-11401/Downstream/69393;
Nearest TSS
ENST00000527434/Upstream/117839; ENST00000319817/Downstream/65851;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/42942, chr16-CpG: 20/Downstream/39748
Upstream sequence
TCCTTTATTATTTTAGAGACTGCTTCTTCCATCCCCTAGGGAGAGTGTTTTTAGCTCCATGGAGCATGAATTTTTTCACTTATCTAGTGATGATTAGGTA
Downstream sequence
cgagtccatttgatgatgattccattcgagtccatttgatgatgattccatttgagtccatttgatgatgattccattcgagtccttttgatgatgattc
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate