Basic Information
VIS ID
TVIS10015444
Fusion event
HBV-LOC107985400 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr20
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
25697180/25716544 (Hg38)
End
25697180/25716544 (Hg38)
Location type
Intronic
Target gene
LOC107985400
Nearest miRNA
hsa-mir-103a-2/Upstream/7245853; hsa-mir-1-1/Downstream/491642;
Nearest TSS
ENST00000382410/Upstream/19703; ENST00000376445/Downstream/34674;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/19396, chr20-CpG: 25/Downstream/293211
Upstream sequence
cccgcctcagcctcccaaaatgctggaattacaggcgtgagccactgtgcccggcctatgtggtttattgatgtatctccattgcctcaaacatggtcag
Downstream sequence
tttcttctttattagtcttgctagtggtctatcaattttgttgatcctttcgaaaaaccagctcctggattcattaattttttgaagggttgtttgtgtc
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate