Basic Information
VIS ID
TVIS10015446
Fusion event
HBV-chrX integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
154660457/155430796 (Hg38)
End
154660457/155430796 (Hg38)
Nearest miRNA
hsa-let-7f-2/Upstream/47598; hsa-mir-1184-3/Downstream/26721;
Nearest TSS
ENST00000429181/Upstream/48681; ENST00000447347/Downstream/27876;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/47808, chrX-CpG: 142/Downstream/26930
Upstream sequence
ACAGCTATGTCCTCTTTTTGAAATAAGGCAATAAGGCATCAGGGGCTGAATAGTTGTGAAAGCTCTTTGACCTGAAGTATCAGTAAATGCATAAGATTTA
Downstream sequence
agagaagaatcaaatagacgcaataaaaaacgataaaggggatatcaccaccattcccacagaaatacaaactaccatcagagaatactataaatacctc
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate