Basic Information
VIS ID
TVIS10015451
Fusion event
HBV-DDX11L1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
GRCh37/hg19
Start
10353/10353 (Hg38)
End
10353/10353 (Hg38)
Location type
Promoter
Fragile sites / regions
FRA1A
Target gene
DDX11L1
Nearest miRNA
hsa-mir-101-1/Downstream/7016;
Nearest TSS
ENST00000473358/Downstream/19201;
Nearest CpG islands
None/Target, None/Upstream, chr1-CpG: 111/Downstream/18382
Upstream sequence
tagagacgtcctgcctttctggacccaacaaatgcttacctcacatgtattgattgatgtcttgtgtctccctaaaacatacacaatcaagctgtaaccc
Downstream sequence
aaccaccttgggcacatgctctcaggagctcttggggctgtgccacaggtcataatccttaaccttgacaaaataaacttctaaattgattgaaacctgt
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate