Basic Information
VIS ID
TVIS10015452
Fusion event
HBV-chr1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
249240304/248946105 (Hg38)
End
249240304/248946105 (Hg38)
Fragile sites / regions
FRA1I
Nearest miRNA
hsa-mir-101-1/Upstream/119662;
Nearest TSS
ENST00000473358/Upstream/39733;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/39314, None/Downstream
Nearby gene
LOC105373318(-9036) ;
Upstream sequence
GACCAAGCTTTGTTAATTTTGTCAGCATATGGTGCCTAACACTAAGCTGTATACCTAACCAGTTAATAACTGCTGCTTTGTTGAGAATGAAAAAGTTTAG
Downstream sequence
GCCCCAATTTCAAATATTTTCTACCCCAACTATGTTATGCAATATATTAATACTAAATATGCCAGTCTATTTTCTTGCTTAGTAATAAAAATACAACGTG
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
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