Basic Information
VIS ID
TVIS10015453
Fusion event
HBV-chr11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr11
Cytoband
q11
Reference genome
GRCh37/hg19
Start
51575702/54543576 (Hg38)
End
51575702/54543576 (Hg38)
Nearest miRNA
hsa-mir-129-2/Upstream/6446718; hsa-let-7a-2/Downstream/2200297;
Nearest TSS
ENST00000527297/Upstream/4244958; ENST00000319760/Downstream/60422;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/4244975, chr11-CpG: 94/Downstream/1329016
Upstream sequence
TATCCCTTTAGTAGAGCTTGCCCCTTCACAGCTACAACAATATGCTTGTAAATTCACTTTTGCATTGCTGGAAAAAATACACTTGCTAAGAGTCCTTTTC
Downstream sequence
TTATGTGTGGTTTCCCATCCAATTATTCAATGCATTTTGGTTTTTATAACTCCAGGCTACTGACACCTGTCTCTTGGTCCCACCCACAAGTGCAAGCACA
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
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