Basic Information
VIS ID
TVIS10015454
Fusion event
HBV-chr17 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr17
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
22261216/22761889 (Hg38)
End
22261216/22761889 (Hg38)
Nearest miRNA
hsa-mir-1180/Upstream/3417315; hsa-mir-10226/Downstream/4532021;
Nearest TSS
ENST00000595228/Upstream/69055; ENST00000583786/Downstream/4238036;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/69207, chr17-CpG: 114/Downstream/3969139
Upstream sequence
ACTCTTCTTGATCCAGGTCCATAATACTTGGGGGTAGCTATAATGAACTGTATCCGGCATCTTGTTCTTACCTCACAGCCATAAAGTCAAGACCAACCAC
Downstream sequence
acagagtggagcattcctattgacagagcagtttggaaacactcttgttgtagaatctgctagtggagatttggagcgctttgaggcctatggtagtaaa
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate