Basic Information
VIS ID
TVIS10015456
Fusion event
HBV-chr4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr4
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
191044236/190123081 (Hg38)
End
191044236/190123081 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/5184641;
Nearest TSS
ENST00000502981/Upstream/58579; ENST00000616166/Downstream/50693;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/30627, chr4-CpG: 24/Downstream/50052
Upstream sequence
ctgaggtcaggagttcaaaaccagcctggacaacatggtgaaaccctgtctctgagaactgcttgaacctcagaggcggaggttgcagtgagacaagatc
Downstream sequence
tcgggttcgggttcgggttcgggttcgggttcgggttcggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
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