Basic Information
VIS ID
TVIS10015457
Fusion event
HBV-chr5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
11737/11737 (Hg38)
End
11737/11737 (Hg38)
Nearest miRNA
hsa-mir-10397/Downstream/1051159;
Nearest TSS
ENST00000502646/Downstream/80414;
Nearest CpG islands
None/Target, None/Upstream, chr5-CpG: 87/Downstream/38953
Upstream sequence
TACATTTATATCTTTTTTTAAGTAAAGCAATAAGTGTCTGTCAAGGTCATTAGGAACACAGGTATAGTCTCCCTGACCCAGTACttttcttttctttttt
Downstream sequence
accctaaccctaaccctaaccctaaccctaaccctaaccctaacccctaacccctaaccctaaccctaaaccctaaccctgaacccgaaccctgacccct
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate