Basic Information
VIS ID
TVIS10015460
Fusion event
HBV-chr7 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
159128623/159335933 (Hg38)
End
159128623/159335933 (Hg38)
Nearest miRNA
hsa-mir-10399/Upstream/744237;
Nearest TSS
ENST00000635602/Upstream/190976;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/104595, None/Downstream
Upstream sequence
aagaaaatctagacagaaacatactcagaaacaccttcgtgatgtttgcaatcaagtcacagagttgaaccttccgtttcatagagcaggttggaaacac
Downstream sequence
gggttagggttagggtttagggttagggttagggttagggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
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