Basic Information
VIS ID
TVIS10015461
Fusion event
HBV-chr9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr9
Cytoband
p11.2
Reference genome
End
66782494/40829466 (Hg38)
Nearest miRNA
hsa-mir-101-2/Upstream/3935935; hsa-let-7a-1/Downstream/99544;
Upstream sequence
tattgtggaaaaggaaatatcttcacataaaaactacacagaatcattctgagaaacttctttgtgaggtgtgcattcaactcacagagttgatcttatc
Downstream sequence
cataaggaagtgtgttcactgaggccttgtttaccataatgaataaaatggatgtctatcaagcaaaaaaacaaactgggaaatccatttaatggaatac
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate