Basic Information
VIS ID
TVIS10015462
Fusion event
HBV-chr9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chr9
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
66782543/40829515 (Hg38)
End
66782543/40829515 (Hg38)
Nearest miRNA
hsa-mir-101-2/Upstream/3935984; hsa-let-7a-1/Downstream/99495;
Nearest TSS
ENST00000422679/Upstream/40239; ENST00000613309/Downstream/244195;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/177735, chr9-CpG: 76/Downstream/162337
Upstream sequence
GCCAGCAGAGTTTCACAATGCGAAGGGCGCCACGGCTCTAGTCTGGGCCTTCTCAGTACTTGCCCAAAATAGAAACGCTTTCTGAAAACTAATAACTTTG
Downstream sequence
ttggtggattatatcctttatcattacctaatgcccttttttgtccttcttaatttttatgggtttaaggtctgtttctgttttatctgatataagaaca
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
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