Basic Information
VIS ID
TVIS10015467
Fusion event
HBV-chrY integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23867110
Virus Sequence
Virus name
HBV
Reference genome
AB014381.1
Host Sequence
Chromosome
chrY
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
13861418/11740712 (Hg38)
End
13861418/11740712 (Hg38)
Nearest miRNA
hsa-mir-3690-2/Upstream/7134484; hsa-mir-12120/Downstream/1738465;
Nearest TSS
ENST00000430575/Upstream/1829914; ENST00000417071/Downstream/921622;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/310280, chrY-CpG: 40/Downstream/48625
Upstream sequence
GCCGCACTTTATACAATCTACAGTGAGTCTTGCTCTCATGCAGAAGAACATGAGtgatataatttggactgtgtccctgcccaaatgataatttgtaatc
Downstream sequence
gaaacaaatgtaattgactaaaaaggaatggactcaaatagaatggactcgaaagaaatggtctcaagtggaatttattcgaatagaatggaatccaatg
Reference
Li, W., et al. HIVID: an efficient method to detect HBV integration using low coverage sequencing. Genomics,2013, 102(4): 338-344.
Curate