hsa-mir-6780a-3p _LIHC.png
GRM8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015571
Fusion event
HBV-GRM8 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr7
Cytoband
q31.33
Reference genome
GRCh37/hg19
Start
126145021/126504967 (Hg38)
End
126145021/126504967 (Hg38)
Orient
+
Location type
Intronic
Target gene
GRM8
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-491-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-877-3p
Nearest miRNA
hsa-mir-10525/Upstream/9484648; hsa-mir-10399/Downstream/553121;
Nearest TSS
ENST00000635602/Upstream/39668; ENST00000450061/Downstream/28938;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1574822, chr7-CpG: 237/Downstream/746279
Upstream sequence
CTTCTTGGAATGAAAAACCTCTATAACTTG
Junction sequence
CTTCTTGGAATGAAAAACCTCTATAACTTGGCACGGTGCTGGTGCACAGACCAATTGATGCCTACAGACTCCTCGTAGAGAGATCAGT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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