VISDB Viral Integration Site DataBase

VIS ID

TVIS10015577

Fusion event

HBV-ALG10B integration

Validated

No

Detection method

MAPS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Perfect

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

AY800389.1;AY800390.1;AY800391.1;AY800392.1

Orient

-

Chromosome

chr12

Cytoband

q12

Reference genome

Start

End

38719823/38326021 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-26a-5p ; hsa-mir-3929 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-188-3p ; hsa-mir-590-3p ; hsa-mir-4775 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6772-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6089 ; hsa-mir-544b ; hsa-mir-483-5p ; hsa-mir-1261 ; hsa-mir-190a-3p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-891a-3p ; hsa-mir-3688-5p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6744-5p ; hsa-mir-4790-3p ; hsa-mir-5011-5p ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-5696 ; hsa-mir-4729 ; hsa-mir-4733-5p ; hsa-mir-4786-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-6849-3p ; hsa-mir-4459 ; hsa-mir-4433a-3p ; hsa-mir-4768-3p ; hsa-mir-433-5p ; hsa-mir-665 ; hsa-mir-1273e ; hsa-mir-6771-5p ; hsa-mir-4722-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/12451942; hsa-let-7i/Downstream/3997679;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/9180, chr12-CpG: 29/Downstream/579425

Upstream sequence

TGTTTCATAATAAGAATCATCCTAAACATTTTTCTGT

Junction sequence