AMPH _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015579
Fusion event
HBV-AMPH integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
38624905/38585305 (Hg38)
End
38624905/38585305 (Hg38)
Orient
-
Location type
Intronic
Target gene
AMPH
miRNAs that regulate target gene
hsa-let-7b-5p
Nearest miRNA
hsa-mir-1183/Upstream/1665873; hsa-mir-10399/Downstream/4565590;
Nearest TSS
ENST00000635602/Upstream/122192; ENST00000464276/Downstream/46115;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/273575, chr7-CpG: 95/Downstream/45534
Upstream sequence
CAGACTCAGGTCTGACTCGAGGTGGATGCCCTTAGCCA
Junction sequence
CAGACTCAGGTCTGACTCGAGGTGGATGCCCTTAGCCATGGTGAACACACCAATTTATGCCTACAGCCTCCTAGTACAAAGACCTTTA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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