FAM117A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015582
Fusion event
HBV-FAM117A integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr17
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
47840931/49763569 (Hg38)
End
47840931/49763569 (Hg38)
Orient
+
Location type
Intronic
Target gene
FAM117A
miRNAs that regulate target gene
hsa-mir-484
Nearest miRNA
hsa-mir-10226/Upstream/252669; hsa-mir-1250/Downstream/1005081;
Nearest TSS
ENST00000595228/Upstream/16306; ENST00000506533/Downstream/562;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/85159, chr17-CpG: 47/Downstream/101
Upstream sequence
GCAGAGGTGTCGTGTGGGGTGAGTGGAAGATGCAGGGGG
Junction sequence
GCAGAGGTGTCGTGTGGGGTGAGTGGAAGATGCAGGGGGTGGTGAACACACCAATTTATGCCTACAGCCTCCTAGTACAAAGACCTTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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