Basic Information
VIS ID
TVIS10015587
Fusion event
HBV-chr7 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr7
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
1402609/1362973 (Hg38)
End
1402609/1362973 (Hg38)
Orient
+
Fragile sites / regions
FRA7B
Nearest miRNA
hsa-mir-339/Upstream/339947; hsa-mir-10399/Downstream/481207;
Nearest TSS
ENST00000635602/Upstream/95620; ENST00000445345/Downstream/74638;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/38966, chr7-CpG: 72/Downstream/5907
Nearby gene
MICALL2(+) ;
Upstream sequence
TTTTTCTTTTGAGTTGGAGCTTTGCTCTTGTTGCCTAGGCTGGAGTGCAAT
Junction sequence
TTTTTCTTTTGAGTTGGAGCTTTGCTCTTGTTGCCTAGGCTGGAGTGCAATAACACACCAATTTATGCCTACAGCCTCCTAGTACAAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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