MYOM1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015589
Fusion event
HBV-MYOM1 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
GRCh37/hg19
Start
3201778/3201780 (Hg38)
End
3201778/3201780 (Hg38)
Orient
+
Location type
Intronic
Target gene
MYOM1
miRNAs that regulate target gene
hsa-mir-148b-3p
Nearest miRNA
hsa-mir-8078/Upstream/3089441; hsa-mir-1-2/Downstream/683573;
Nearest TSS
ENST00000575820/Upstream/7826; ENST00000608786/Downstream/18069;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/134245, chr18-CpG: 79/Downstream/45515
Upstream sequence
AAAATACAGAAATTAGCTGGGCATGGTGATGTGTGCCTGTA
Junction sequence
AAAATACAGAAATTAGCTGGGCATGGTGATGTGTGCCTGTAGTTGACATTGCTGAAAGTCCAAGAGTCCTCTTATGCAAGACCTTGGG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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