Basic Information
VIS ID
TVIS10015592
Fusion event
HBV-chr1 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
p36.13
Reference genome
GRCh37/hg19
Start
18929088/18602594 (Hg38)
End
18929088/18602594 (Hg38)
Orient
+
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/1324619; hsa-mir-101-1/Downstream/280608;
Nearest TSS
ENST00000473358/Upstream/121612; ENST00000400661/Downstream/28412;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/119421, chr1-CpG: 201/Downstream/27807
Nearby gene
PAX7 ;
Upstream sequence
ATGCATTCATTCATTCATTCACTCATTCATTCACTCATGC
Junction sequence
ATGCATTCATTCATTCATTCACTCATTCATTCACTCATGCCTGAACACACCAATTTATGCCTACAGCCTCCTAGTACAAAGACCTTTA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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