Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene119717865119615724119693370119588337119605895119646165119649008119604731119607428119617337119620005119635038119637271119638169119639726119649806119650874119640601119641511119622838119623067119610218119610367119620158119620307119653101
hsa-mir-4646-5p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015596
Fusion event
HBV-SEPTIN6 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chrX
Cytoband
q24
Reference genome
GRCh37/hg19
Start
118787064/119653101 (Hg38)
End
118787064/119653101 (Hg38)
Orient
+
Location type
Intronic
Target gene
SEPTIN6
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-3178 ; hsa-mir-6077 ; hsa-mir-2277-5p ; hsa-mir-873-5p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-212-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-3942-3p ; hsa-mir-6867-5p ; hsa-mir-4314 ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-3925-3p ; hsa-mir-622 ; hsa-mir-508-5p ; hsa-mir-1306-3p ; hsa-mir-133a-3p ; hsa-mir-133b ; hsa-mir-29b-2-5p ; hsa-mir-5087 ; hsa-mir-5695 ; hsa-mir-8068
Nearest miRNA
hsa-let-7f-2/Upstream/6253; hsa-mir-105-1/Downstream/1717871;
Nearest TSS
ENST00000429181/Upstream/19599; ENST00000343905/Downstream/40269;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/46549, chrX-CpG: 100/Downstream/39327
Upstream sequence
TGGGAGAGAGTCAAGATTACAGAGGGCATTTGAAACTTCCAAAAA
Junction sequence
TGGGAGAGAGTCAAGATTACAGAGGGCATTTGAAACTTCCAAAAAGCTGGTGAACACACCAATTTATGCCTACAGCCTACTAGTACAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate