Basic Information
VIS ID
TVIS10015601
Fusion event
HBV-chr1 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
77316980/76851295 (Hg38)
End
77316980/76851295 (Hg38)
Orient
+
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/5783579; hsa-mir-11399/Downstream/208848;
Nearest TSS
ENST00000473358/Upstream/72028; ENST00000496845/Downstream/16146;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1054077, chr1-CpG: 112/Downstream/16131
Nearby gene
ST6GALNAC5 ;
Upstream sequence
CCTGCCCTTTCTGAGCCTGGTTCTTCTGATATTCATTCAATCTTGGGAACTATC
Junction sequence
CCTGCCCTTTCTGAGCCTGGTTCTTCTGATATTCATTCAATCTTGGGAACTATCGAAAAAGTTGCATGGTGCTGGTGAACACACCAAT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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