MOB2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015612
Fusion event
HBV-MOB2 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
GRCh37/hg19
Start
1696955/1675725 (Hg38)
End
1696955/1675725 (Hg38)
Orient
+
Location type
Intronic
Target gene
MOB2
Nearest miRNA
hsa-mir-210/Upstream/419055; hsa-let-7a-2/Downstream/183739;
Nearest TSS
ENST00000527297/Upstream/9858; ENST00000436539/Downstream/9904;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/22731, chr11-CpG: 21/Downstream/18392
Upstream sequence
TCACTGATGAAAGATTGAACCCAGAATGGAAAAGGAACTAAAAAATTAATGACAAAAACAGCTC
Junction sequence
TCACTGATGAAAGATTGAACCCAGAATGGAAAAGGAACTAAAAAATTAATGACAAAAACAGCTCGGACAAAGTTGCATGGTGCTGGTG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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